Prof. Dr. HASAN OĞUL

Bilgisayar Mühendisliği Programı



Tel : 0312 246 6666 / 1833
E-Posta : hogul[at]baskent.edu.tr
Web : http://www.baskent.edu.tr/~hogul/

  • Doktora (2006), Orta Doğu Teknik Üniversitesi, Bilgisayar - Bilişim Bilimleri Ve Mühendisliği
  • Yüksek Lisans (2001), Ege Üniversitesi, Bilgisayar Bilimleri
  • Lisans (1998), Orta Doğu Teknik Üniversitesi, Elektrik-Elektronik Mühendisliği

Çalışma Alanları


  • BİLGİSAYAR-BİLİŞİM BİLİMLERİ VE MÜHENDİSLİĞİ

  • BİYOENFORMATİK

Projeler


  • Ogul H. Gen ifade veri-tabanlarında içerik tabanlı arama: Bağlama özgü imzalar. ", BAşkent Üniv. Bilgisayar Müh.", TÜBİTAK", 01/04/2016.

  • Oğul H. X-ray tabalı bilgisayarlı tanı sisteminin iyileştirilmesi ve bir prognoz asistanına dönüştürülmesi. ", Başkent Üniv. Bilgisayar Müh.", ", 01/09/2015.

  • Oğul H, Cüceloğlu İ. Döküman Kategorizasyonu ve İmza Bölge Analizi. ", Başkent Üniversitesi", SANTEZ", 28/02/2014.

  • Özcan G, Dede D. Yüksek ölçekli verinin çok yönlü ve çok kaynaklı analizi. ", Bilgisayar Mühendisliği", Başkent Üniversitesi", 31/10/2013.

  • Altındağ O, Özcan G, Kalkan A, Cüceloğlu İ. Dizilim ve gen ifade verilerinin bütünleştirilmesiyle mikroRNA modül ağlarının keşfi. ", Bilgisayar Mühendisliği", TÜBİTAK", 31/03/2013.

Kitaplar


  • Ogul H. Content-based retrieval of microarray experiments. In:Pattern Recognition in Computational Molecular Biology. : Wiley; 2016

  • Oğul H. Computational Prediction of MicroRNA Function and Activity. In:Jens Almer editors. miRNomics: MicroRNA Biology and Computational Analysis. USA: Springer; 2014. p.1-20.

Makaleler


  • Asuroglu T, Acici K, Erdas C, Toprak M, Erdem H, Ogul H. Parkinson's disease monitoring from gait analysis via foot-worn sensors. Biocybernetics and Biomedical Engineering, 2018; 38:760-772. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Sumer E, Engin M, Agildere M, Ogul H. Monitoring Nodule Progression in Chest X-ray Images. Pamukkale University Journal of Engineering Sciences, 2018; :-. ( EBSCO )

  • Acici K, Erdas C, Asuroglu T, Ogul H. HANDY: A benchmark dataset for context-awareness via wrist-worn motion sensors. Data, 2018; 3:24-. ( Emerging Sources Citiantion Index )

  • Sener D, Santoni D, Fellici G, Ogul H. A content-based retrieval framework for whole metagenome sequencing samples. Journal of Integrative Bioinformatics, 2018; :-. ( Emerging Sources Citation Index )

  • Oztemur Y, Ozkoc E, Ogul H, Dedeoglu B. Identification of regulatory circuits specific to breast cancer development by enrichment based circuit finder. ESMO Open, 2018; 3:302-. ( Google Scholar )

  • Erdas C, Asuroglu T, Acici K, Ogul H. Comparison of Artificial Neural Networks and Genetic Programming Methods For Activity Recognition. Journal of Intelligent Systems and Applications, 2018; :-. ( Google Scholar )

  • Ogul H. ALoT: A time-series similarity measure based on alignment of textures. Lecture Notes in Computer Science, 2018; :-. ( ISI Database'e giren tüm indeksler )

  • Açıcı K, Erdaş Ç, Aşuroğlu T, Kılınç M, Erdem H, Oğul H. A Random Forest method to detect Parkinson's Disease via gait analysis. Communications in Computer and Information Science, 2017; :-. ( ISI Database'e giren tüm indeksler )

  • Sümer E, Sümer S, Oğul H, Çetiner C. A Novel Computer Vision-Based Advertisement System For Individual Marketing. Technical Gazette, 2017; :-. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Şener D, Oğul H. Retrieving relevant time-course experiment: A study on Arabidopsis microarrays. IET Systems Biology, 2016; :-. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Ogul H, Tuncer E. MicroRNA expression prediction: regression from regulatory elements. Biocybernetics and Biomedical Engineering, 2016; :-. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Oğul H, Kırmacı B. Lyrics mining for music meta-data estimation. IFIP Advances in Information and Communication Technology, 2016; :-. ( ISI Database'e giren tüm indeksler )

  • Erdas B, Atasoy I, Açıcı K, Oğul H. Integrating features for accelerometer-based activity recognition. Procedia Computer Sience, 2016; :-. ( ISI Database'e giren tüm indeksler )

  • Özkoç E, Oğul H. Content-based search on time-series microarray databases using clustering-based fingerprints. Current Bioinformatics, 2016; :-. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Ogul H, Ogul B, Agildere M, Bayrak T, Sümer E. Eliminating rib shadows in chest radiographic images providing diagnostic assistance. Computer Methods and Programs in Biomedicine, 2016; :-. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Açıcı K, Terzi Y, Oğul H. Retreving relevant experiments: the case of microRNA microarrays. Biosystems, 2015; 131:71-78. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Çorapçıoğlu E, Oğul H. miSEA: microRNA set enrichment analysis. Biosystems, 2015; 134:37-42. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Dede D, Ogul H. TriClust: A tool for cross-species analysis of gene regulation. Molecular Informatics, 2014; 33:382-387. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Oğul H, Kalkan A, Umu S, Akkaya M. TRAINER: A general-purpose trainable short biosequence classifier. Protein and Peptide Letters, 2013; 20:1108-1114. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Ogul H, Akkaya M. Data integration in functional analysis of microRNAs. Current Bioinformatics, 2012; 6:462-472. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Ogul H, Umu S, Tuncel Y, Akkaya M. A probabilistic approach to microRNA-target binding. Biochemical and Biophysical Research Communications, 2011; (413):111-115. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Oğul H. Variable context Markov chains for HIV protease cleavage site prediction. Biosystems, 2009; 96(3):246-250. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Oğul H, Mumucuoğlu E. Subcellular localization prediction with new protein encoding schemes. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2007; 4(1):227-232. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Oğul H, Mumcuoğlu E. A discriminative method for remote homology detection based on n-peptide compositions with reduced amino acid alphabets. Biosystems, 2007; 87:75-81. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Oğul H, Mumcuoğlu E. SVM-based detection of distant protein structural relationships using pairwise probabilistic suffix trees. Computational Biology and Chemistry, 2006; 30:292-299. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Oğul H, Mumcuoğlu E. Protein solvent accessibility prediction using support vector machines and sequence conservations. Lecture Notes in Artificial Intelligence, 2006; 3948:141-148. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

  • Oğul H, Mumcuoğlu E. Discriminative remote homology detection using maximal unique sequence matches. Lecture Notes in Computer Science, 2005; 3546:283-292. ( SCI-Exp : Science Citation Index-Expanded (SCI dahil) )

Bildiriler


  • Yardim N, Kocadag S, Akgun S, Pekcan G, Kiziltan G, Aksoydan E, Karaagaoglu E, Ogul H. Gaziantep Beslenme ve Sağlik Araştirmasi (GBSA) ? 2017. 2. International Public Health Congress: ; 28/09/2018 - 29/09/2018

  • Bayrak T, Ogul H. Data Integration for gene expression prediction. 3rd Int Conf on Artificial Intelligence and Data Processing (IDAP 2018): ; 28/09/2018 - 29/09/2018

  • Ogul H. Wearable Sensors for Diagnosis and Monitoring. 3. ULUSLARARASI SAĞLIKTA BILIŞIM VE BILGI GUVENLIGI: ; 14/11/2017 - 19/11/2017

  • Ogul H. Applications of Bioinformatics in Personalized Medicine. 3. ULUSLARARASI SAĞLIKTA BILIŞIM VE BILGI GUVENLIGI: Antalya; 14/11/2017 - 19/11/2017

  • Erdas C, Asuroglu T, Acici K, Ogul H. Aktivite Tanımada Yapay Sinir Ağları ve Genetik Programlama. ASYU 2018: ; 05/10/2017 - 07/10/2017

  • Kılınç M, Yılmaz" A, Açıcı K, Erdaş Ç, Oğul H. INTEGRATING FEATURES OF ACCELOROMETER BASED TREMOR RECOGNITION. XIII World Congress of Neurology: Kyoto; 16/09/2017 - 21/09/2017

  • Oğul H, Erdaş B, Açıcı K, Aşuroğlu T. HANDY: A benchmark set for mobile context-awareness. 7th ACM Conference on Digital Health: ; 02/07/2017 - 05/07/2017

  • Çorapçıoğlu E, Oğul H. Exploiting active microRNA interactions for diagnosis from expression profiling experiments.. 30th IEEE International Symposium on Computer-Based Medical Systems: ; 22/06/2017 - 24/07/2017

  • Açıcı K, Erdaş B, Kılınç M, Erdem H, Oğul H. Wearable Solutions for Parkinson's Disease Monitoring. 10th Int Sym on Health Informatics and Bioinformatics: ; 28/05/2017 - 30/05/2017

  • Çelik N, Oğul H. A web application for content-based geographic image retrieval. 25th IEEE Signal Processing and Communications Applications Conference: ; 15/05/2017 - 18/05/2017

  • Açıcı K, Aşuroğlu T, Oğul H. Information retrieval in metal music subgenres. 25th IEEE Signal Processing and Communications Applications Conference: ; 15/05/2017 - 18/05/2017

  • Çorapçıoğlu E, Oğul H. A medical decision support system proposal supported by genomic analysis. 25th IEEE Signal Processing and Communications Applications Conference: ; 15/05/2017 - 18/05/2017

  • Bayrak T, Oğul H. Microarray missing data imputation using regression. 13th IASTED International Conference on Biomedical Engineering: ; 20/02/2017 - 22/02/2017

  • Haberal İ, Oğul H. DeepMBS: Prediction of protein metal binding-site using deep learning networks. 4th International Conference on Mathematics and Computers in Sciences and Industry: ; 01/01/2017 - 02/01/2017

  • Aşuroğlu T, Açıcı K, Erdaş B, Oğul H. Texture of Activities: Exploiting Local Binary Patterns for Accelerometer Data Analysis. 12th International Conference on Signal-Image Technology and Internet-Based Systems: ; 28/11/2016 - 01/12/2016

  • İğdeli M, Yılmaz A, Oğul H. Sequence analysis to predict microRNA chemotherapy resistance. IEEE IS'2016: Sofya; 04/07/2016 - 06/07/2016

  • Dikmen M, Açıcı K, Oğul H. Bakteriyel Tip IV Protein Efektörlerin Tespiti için İşlemsel Yaklaşımlar. ASYU 2016: Düzce; 27/05/2016 - 29/05/2016

  • Oğul B, Oğul H, Sümer E. Context-sensitive model learning for lung nodule detection. IEEE SIU'2016: ; 16/05/2016 - 19/05/2016

  • Narcı K, Oğul H, Akkaya M. Sequence-based microRNA clustering. International Conference on Bioinformatics Models, Methods and Algorithms: ; 21/02/2016 - 23/02/2016

  • Oğul H, Özkoç E. Effect of feature selection on time-series microarray experiment search. Bioengineering Conference 2016: İstanbul; 25/11/2015 - 27/11/2015

  • Engin M, Oğul H, Sümer E. An Evaluation of Image Registration Methods for Chest Radiographs. SAI Intelligent Systems Conference: Londra; 10/11/2015 - 11/11/2015

  • Açıcı K, Oğul H. Inferring Microarray Relevance By Enrichment Of Chemotherapy Resistance-Based. IEEE 19th International Conference on Intelligent Engineering Systems: Bratislava; 03/07/2015 - 05/07/2015

  • Kırmacı B, Oğul H. Evaluating text features for lyrics-based songwriter prediction. IEEE 19th International Conference on Intelligent Engineering Systems: Bratislava; 03/07/2015 - 05/07/2015

  • Dede D, Oğul H. Inferring Similarity between Time-Series Microarrays: A Content-based Approach. 2nd IEEE International Conference on Cybernetics (CYBCONF 2015): Polonya; 24/06/2015 - 26/06/2015

  • Küçükbay S, Oğul H. Predicting Metal-Binding Sites of Protein Residues. International Workshop on Biological, Chemical and Physical Computations: Polonya; 13/06/2015 - 16/06/2015

  • Kırmacı B, Oğul H. Şarkı sözünden yazar tanıma. 23rd IEEE Signal Processing and Communications Applications Conference (SIU 2015): Malatya; 16/05/2015 - 19/05/2015

  • Açıcı K, Oğul H. Comparison of Similarity Metrics in Microarray Experiment Retrieval. 23rd IEEE Signal Processing and Communications Applications Conference (SIU 2015): Malatya; 16/05/2015 - 19/05/2015

  • Oğul B, Sümer E, Oğul H. Unsupervised Rib Delineation In Chest Radiographs By An Integrative Approach. 11th International Conference on Computer Vision Theory and Applications (VISAPP'15): Berlin; 11/03/2015 - 14/03/2015

  • Cüceloğlu İ, Oğul H. Automated Categorization of Scanned Bank Documents from Extracted Text Content. 10th International Conference on Knowledge Management: Antalya; 24/11/2014 - 26/11/2014

  • Açıcı K, Oğul H. Sensitive Prediction of Bacterial Type IV Effectors. 18th Annual Biomedical Engineering Conference: İstanbul; 16/10/2014 - 17/10/2014

  • Bayrak T, Oğul H. Classification of Patients with Heart Failure. 18th Annual Biomedical Engineering Conference: İstanbul; 16/10/2014 - 17/10/2014

  • Eren Ö, Oğul H. Automated classification of allergen proteins. 18th Annual Biomedical Engineering Conference: İstanbul; 16/10/2014 - 17/10/2014

  • Hayran A, Oğul H, Özkoç E. Content-based search in time-series microarray databases.. 5th International Workshop on Biological Knowledge Discovery and Data Mining (BIOKDD'14): Almanya; 01/09/2014 - 04/09/2014

  • Cüceloğlu İ, Oğul H. Detecting handwritten signatures in scanned documents. Computer Vision Winter Workshop (CVWW'14): Çekya; 03/05/2014 - 05/05/2014

  • Haberal İ, Oğul H. Detection of microRNA clusters associated with prostate cancer.. 22nd Signal Processing and Communications Applications Conference (SIU 2014): Trabzon; 23/04/2014 - 25/04/2014

  • Ergin M, Oğul H. Analysis of the EEG Signals to Infer Whether the Brain Is in Planning or Relaxing State. Tıp Teknolojileri Kongresi: Antalya; 31/10/2013 - 02/11/2013

  • Oğul H, Özcan G. A framework for integrative analysis of transcriptional and post-transcriptional gene regulation. 7th IEEE International Conference on Application of Information and Communication Technologies (AICT'13): Bakü; 20/10/2013 - 22/10/2013

  • Yalnız E, Oğul H. A pattern classification application for bank marketing. 8th International Statistics Congress (ISTCON'13): Antalya; 01/10/2013 - 03/10/2013

  • Ölçer D, Oğul H. Combined analysis of sequence and time-series expression data can reveal cancer-related microRNA clusters. International Symposium on Health Informatics and Bioinformatics, HİBİT'13: Ankara; 25/09/2013 - 27/09/2013

  • Oğul H, Mumcuoğlu E. Prediction of protein subcellular localization using support vector machines and probabilistic suffix trees. International Symposium on Health Informatics and Bioinformatics, HİBİT'13: Ankara; 25/09/2013 - 27/09/2013

  • Dede D, Oğul H. TriClust: A tool for cross-species analysis of gene regulation. International Symposium on Health Informatics and Bioinformatics, HİBİT'13: Ankara; 25/09/2013 - 27/09/2013

  • Altındağ O, Oğul H. Microarray-based prediction of breast cancer subtype: mRNA versus microRNA. International Symposium on Health Informatics and Bioinformatics, HİBİT'13: Ankara; 25/09/2013 - 27/09/2013

  • Dede D, Oğul H. A three-way clustering approach to cross-species gene regulation analysis. 7th IEEE International Symposium on INnovations in Intelligent SysTems and Applications (INISTA'13): Albena; 19/06/2013 - 21/06/2013

  • Ogul H, Altındağ O. Integrating microRNA and mRNA expression data for cancer classification. 2nd International Conference on Pattern Recognition Applications and Methods (ICPRAM'13): Barselona; 15/02/2013 - 18/02/2013

  • Ölçer D, Oğul H. Clustering microRNAs from sequence and time-series expression. Fifth International Conference on Bioinformatics, Biocomputational Systems and Biotechnologies (BIOTECHNO'13): Lisbon; 01/01/2013 - 03/01/2013

  • Oğul H, Ekmekçiler E. Two-way colloborative filtering on semantically enhanced movie ratings. 34th Int Conference on Information Technology Interfaces (ITI'2012): Hırvatistan; 25/06/2012 - 28/06/2012

  • Oğul B, Tuncel Y, Umu S, Akkaya M, Oğul H. mmDB: a repository of paired microRNA-messengerRNA expression profiles. 7th International Sympoisum on Health Informatics and Bioinformatics: Ürgüp; 19/04/2012 - 22/04/2012

  • Beyan Ç, Oğul H. A fuzzy kNN aprroach for cancer diagnosis with microarray gene expression data. 7th International Sympoisum on Health Informatics and Bioinformatics: Ürgüp; 19/04/2012 - 22/04/2012

  • Oğul H, Beyan Ç, Özsoy Ö, Yıldız K, Ayyıldız T, Sönmez B. MicroRNA target recognition from compositional features of aligned microRNA-mRNA dublexes. Int. Sym on Innovations in Intelligent Systems and Applications: Kayseri; 21/06/2010 - 24/06/2010

  • Salojarvi J, Oğul H, Jaspers P, Ajanki A, Kangasjarvi J, Kaski S. Inferring target genes of transcription factors by probabilistic modeling. Plant ROS Meeting: Helsinki, Finland; 08/07/2009 - 10/07/2009

  • Salojarvi J, Oğul H, Jaspers P, Ajanki A, Kangasjarvi J, Kaski S. Exploring transcription factor target gene relationships by condition dependent module networks. 17th International Conference on Intelligent Systems for Molecular Biology: Stockholm, Sweden; 27/06/2009 - 02/07/2009

  • Oğul H. Prediction of disulfide connectivity patterns from protein sequence. International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics: Orlando, FL, USA; 07/07/2008 - 10/07/2008

  • Polatkan A, Oğul H, Sever H. A data fusion approach in remote homology detection. International Conference on Biocomputation, Bioinformatics, and Biomedical Technologies: Bucharest, Romania; 29/06/2008 - 05/07/2008

  • Oğul H, Erciyes K. Identifying all local and global alignments between two DNA sequences. 16th International Symposium on Computer and Information Sciences: Antalya; 01/08/2001 - 04/08/2001